If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ), 'gf_id' => 'HOM05D000885', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000885' ), 'data_identifier' => 'HOM05D000885', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000885', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p38890' => 'bna', 'A02p38910' => 'bna', 'A03p34840' => 'bna', 'A05p41310' => 'bna', 'A06p37120' => 'bna', 'A09p05570' => 'bna', 'A09p68550' => 'bna', 'A10p01440' => 'bna', 'Aa31LG11G8180' => 'aar', 'Aa31LG11G9720' => 'aar', 'Aa31LG11G9730' => 'aar', 'Aa31LG1G9840' => 'aar', 'Aa31LG2G11580' => 'aar', 'Aa31LG5G16120' => 'aar', 'Aa31LG5G17350' => 'aar', 'Aa31LG5G1870' => 'aar', 'Actinidia13371' => 'ach', 'Actinidia14265' => 'ach', 'Actinidia16220' => 'ach', 'Actinidia16841' => 'ach', 'Actinidia16842' => 'ach', 'Actinidia18653' => 'ach', 'Actinidia19363' => 'ach', 'Actinidia21018' => 'ach', 'Actinidia21426' => 'ach', 'Actinidia21510' => 'ach', 'Actinidia25829' => 'ach', 'Actinidia27596' => 'ach', 'Actinidia40341' => 'ach', 'Ah.06g189090' => 'amhyb', 'Ah.13g072170' => 'amhyb', 'Ah.14g089670' => 'amhyb', 'AL1G12130' => 'aly', 'AL1G65890' => 'aly', 'AL3G16390' => 'aly', 'AL3G17880' => 'aly', 'AL6G38920' => 'aly', 'AL6G50930' => 'aly', 'AL88U10030' => 'aly', 'AL8G22850' => 'aly', 'Aqoxy2G02848_Aqoxy2G02849' => 'aox', 'Aqoxy3G01240' => 'aox', 'Aqoxy4G00669' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1UG3AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.44ZEHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2AD5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3U6H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN33GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJ0ZSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR2EC5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ECF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2SRDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XYIS5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y2GTDS' => 'arhy', 'AT1G02750' => 'ath', 'AT1G56280' => 'ath', 'AT3G05700' => 'ath', 'AT3G06760' => 'ath', 'AT4G02200' => 'ath', 'AT5G26990' => 'ath', 'AT5G49230' => 'ath', 'ATR0706G121' => 'atr', 'ATR0730G182' => 'atr', 'ATR0824G193' => 'atr', 'Atru.chr10.1806' => 'acertr', 'Atru.chr2.130' => 'acertr', 'Atru.chr4.2939' => 'acertr', 'Atru.chr5.1074' => 'acertr', 'Atru.chr9.2584' => 'acertr', 'AUR62000703' => 'cqu', 'AUR62005254' => 'cqu', 'AUR62008139' => 'cqu', 'AUR62008731' => 'cqu', 'AUR62014862' => 'cqu', 'AUR62016157' => 'cqu', 'AUR62025506' => 'cqu', 'AUR62028721' => 'cqu', 'AUR62031068' => 'cqu', 'AUR62035071' => 'cqu', 'BcaB01g02437' => 'bca', 'BcaB04g19599' => 'bca', 'BcaB06g27643' => 'bca', 'BcaC04g19390' => 'bca', 'BcaC04g23661' => 'bca', 'BcaC04g23747' => 'bca', 'BcaC05g29090' => 'bca', 'BcaC05g30555' => 'bca', 'BcaC06g31762' => 'bca', 'BcaC07g42304' => 'bca', 'BcaC07g42405' => 'bca', 'BcaC09g47918' => 'bca', 'BcaNung06747' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00060' => 'bna', 'BolC1t05588H' => 'bol', 'BolC2t11910H' => 'bol', 'BolC3t16513H' => 'bol', 'BolC4t22864H' => 'bol', 'BolC5t28923H' => 'bol', 'BolC5t33976H' => 'bol', 'BolC5t34708H' => 'bol', 'BolC7t44659H' => 'bol', 'BolC8t52831H' => 'bol', 'BolC9t53437H' => 'bol', 'BolC9t53532H' => 'bol', 'BraA02t08862Z' => 'bra', 'BraA02t08864Z' => 'bra', 'BraA03t12665Z' => 'bra', 'BraA05t22854Z' => 'bra', 'BraA06t26638Z' => 'bra', 'BraA09t36111Z' => 'bra', 'BraA09t36198Z' => 'bra', 'BraA09t42198Z' => 'bra', 'BraA10t42420Z' => 'bra', 'C02p58490' => 'bna', 'C03p37970' => 'bna', 'C03p42420' => 'bna', 'C05p01410' => 'bna', 'C05p60540' => 'bna', 'C07p41310' => 'bna', 'C08p53160' => 'bna', 'C09p05150' => 'bna', 'C09p06060' => 'bna', 'CAN.G1273.18' => 'can', 'CAN.G14.5' => 'can', 'CAN.G252.10' => 'can', 'CAN.G338.44' => 'can', 'CAN.G484.52' => 'can', 'CAN.G529.41' => 'can', 'CAN.G668.36' => 'can', 'CAN.G993.19' => 'can', 'CANSAT35G1144' => 'cansat', 'CANSAT54G2807' => 'cansat', 'CANSAT80G2717' => 'cansat', 'CARHR002050' => 'chi', 'CARHR080150' => 'chi', 'CARHR081380' => 'chi', 'CARHR166650' => 'chi', 'CARHR182410' => 'chi', 'CARHR186550' => 'chi', 'CARHR250420' => 'chi', 'CARHR289830' => 'chi', 'Carub.0001s0186' => 'cru', 'Carub.0002s0789' => 'cru', 'Carub.0003s0505' => 'cru', 'Carub.0003s0630' => 'cru', 'Carub.0006s2461' => 'cru', 'Carub.0006s3496' => 'cru', 'Carub.0008s0906' => 'cru', 'Ca_01885_v3' => 'car', 'Ca_09323_v3' => 'car', 'Ca_10157_v3' => 'car', 'Ca_18583_v3' => 'car', 'Ca_19418_v3' => 'car', 'Cc00_g26390' => 'ccan', 'Cc01_g21190' => 'ccan', 'Cc02_g13730' => 'ccan', 'Cc02_g34590' => 'ccan', 'Cc03_g01240' => 'ccan', 'Cc03_g01250' => 'ccan', 'CDE05G1795' => 'cde', 'CDE05G1901' => 'cde', 'CDE11G0605' => 'cde', 'CDE11G1003' => 'cde', 'Cfa000520' => 'cfa', 'Cfa005861' => 'cfa', 'Cfa006677' => 'cfa', 'Cfa015471' => 'cfa', 'Cfa019224' => 'cfa', 'Ciclev10002418m.g' => 'ccl', 'Ciclev10005825m.g' => 'ccl', 'Ciclev10016529m.g' => 'ccl', 'Ciclev10022082m.g' => 'ccl', 'Ciclev10022143m.g' => 'ccl', 'CiPaw.01G143100' => 'cil', 'CiPaw.07G026100' => 'cil', 'CiPaw.07G113400' => 'cil', 'CiPaw.08G158000' => 'cil', 'CiPaw.09G062900' => 'cil', 'CiPaw.10G052100' => 'cil', 'CiPaw.11G019200' => 'cil', 'CiPaw.12G031400' => 'cil', 'ClCG01G023200' => 'cla', 'ClCG03G003020' => 'cla', 'ClCG03G017540' => 'cla', 'ClCG06G004830' => 'cla', 'ClCG09G005430' => 'cla', 'COL.COLO4_04124' => 'col', 'COL.COLO4_23290' => 'col', 'COL.COLO4_31426' => 'col', 'COL.COLO4_34682' => 'col', 'Cpa.g.sc151.41' => 'cpa', 'Cpa.g.sc151.42' => 'cpa', 'Cpa.g.sc159.15' => 'cpa', 'Cpa.g.sc27.12' => 'cpa', 'Cpa.g.sc3064.1' => 'cpa', 'Cpa.g.sc9.106' => 'cpa', 'Cpa.g.sc9.108' => 'cpa', 'CsaV3_1G008860' => 'csa', 'CsaV3_1G038490' => 'csa', 'CsaV3_6G022620' => 'csa', 'CsaV3_6G050350' => 'csa', 'CsaV3_7G029650' => 'csa', 'CsaV3_7G029660' => 'csa', 'CSS0005494' => 'camsi', 'CSS0005888' => 'camsi', 'CSS0011752' => 'camsi', 'CSS0019047' => 'camsi', 'CSS0020477' => 'camsi', 'CSS0027663' => 'camsi', 'CSS0033778' => 'camsi', 'CSS0047909' => 'camsi', 'CSS0049715' => 'camsi', 'DCAR_002496' => 'dca', 'DCAR_004052' => 'dca', 'DCAR_005410' => 'dca', 'DCAR_023320' => 'dca', 'DCAR_026175' => 'dca', 'DCAR_028057' => 'dca', 'DCAR_030490' => 'dca', 'Dinv10049' => 'din', 'Dinv20596' => 'din', 'Dinv24415' => 'din', 'Dinv30858' => 'din', 'Dinv33086' => 'din', 'Dinv38523' => 'din', 'Duzib052G0596' => 'dzi', 'Duzib106G0110' => 'dzi', 'Duzib106G1493' => 'dzi', 'Duzib128G0854' => 'dzi', 'Duzib133G0495' => 'dzi', 'Duzib138G0418' => 'dzi', 'Duzib151G0920' => 'dzi', 'Duzib160G0838' => 'dzi', 'Duzib177G0660' => 'dzi', 'Duzib192G0525' => 'dzi', 'Duzib205G1010' => 'dzi', 'Duzib235G1201' => 'dzi', 'ECA232G2046' => 'eca', 'ECA233G4388' => 'eca', 'ECA236G1398' => 'eca', 'ECA236G3317' => 'eca', 'ECA246G5104' => 'eca', 'ECA248G1596' => 'eca', 'EL10Ac3g04932' => 'bvu', 'EL10Ac4g09840' => 'bvu', 'EL10Ac5g10650' => 'bvu', 'EL10Ac7g17158' => 'bvu', 'EL10Ac8g20430' => 'bvu', 'Eucgr.B02077' => 'egr', 'Eucgr.H01076' => 'egr', 'Eucgr.H03279' => 'egr', 'Eucgr.K02787' => 'egr', 'FAN02G1611' => 'fan', 'FAN04G1252' => 'fan', 'FAN05G1197' => 'fan', 'FAN07G0823' => 'fan', 'FAN08G3554' => 'fan', 'FAN09G2473' => 'fan', 'FAN11G3994' => 'fan', 'FAN12G0449' => 'fan', 'FAN12G3861' => 'fan', 'FAN13G1050' => 'fan', 'FAN14G0304' => 'fan', 'FAN16G3303' => 'fan', 'FAN18G0237' => 'fan', 'FAN21G3190' => 'fan', 'FvH4_3g08710' => 'fve', 'FvH4_4g19190' => 'fve', 'FvH4_5g06340' => 'fve', 'FvH4_6g07090' => 'fve', 'Glyma.03G217300' => 'gma', 'Glyma.07G200800' => 'gma', 'Glyma.09G040200' => 'gma', 'Glyma.10G149200' => 'gma', 'Glyma.13G175600' => 'gma', 'Glyma.15G145400' => 'gma', 'Glyma.17G124400' => 'gma', 'Glyma.19G213900' => 'gma', 'Glyma.20G104400' => 'gma', 'Glyma.20G238951' => 'gma', 'Gohir.A02G052800' => 'ghi', 'Gohir.A08G207300' => 'ghi', 'Gohir.A09G073400' => 'ghi', 'Gohir.A09G236000' => 'ghi', 'Gohir.A11G112600' => 'ghi', 'Gohir.A11G271200' => 'ghi', 'Gohir.A13G111300' => 'ghi', 'Gohir.A13G174900' => 'ghi', 'Gohir.D02G057600' => 'ghi', 'Gohir.D08G223900' => 'ghi', 'Gohir.D09G073100' => 'ghi', 'Gohir.D09G236800' => 'ghi', 'Gohir.D11G117600' => 'ghi', 'Gohir.D11G281400' => 'ghi', 'Gohir.D13G113800' => 'ghi', 'Gohir.D13G180800' => 'ghi', 'Gorai.004G237800' => 'gra', 'Gorai.005G065100' => 'gra', 'Gorai.006G088100' => 'gra', 'Gorai.006G259800' => 'gra', 'Gorai.007G126000' => 'gra', 'Gorai.007G303800' => 'gra', 'Gorai.013G127700' => 'gra', 'Gorai.013G206300' => 'gra', 'GSVIVG01007639001' => 'vvi', 'GSVIVG01014282001' => 'vvi', 'GSVIVG01021103001' => 'vvi', 'GSVIVG01028066001' => 'vvi', 'GSVIVG01028067001' => 'vvi', 'GSVIVG01031200001' => 'vvi', 'GSVIVG01035052001' => 'vvi', 'HanXRQChr01g0003841' => 'han', 'HanXRQChr01g0011781' => 'han', 'HanXRQChr02g0049091' => 'han', 'HanXRQChr02g0049101' => 'han', 'HanXRQChr04g0114641' => 'han', 'HanXRQChr10g0296021' => 'han', 'HanXRQChr11g0338701' => 'han', 'HanXRQChr13g0394451' => 'han', 'HanXRQChr15g0466301' => 'han', 'HanXRQChr15g0466311' => 'han', 'HanXRQChr16g0504731' => 'han', 'Haze_01102' => 'cav', 'Haze_04094' => 'cav', 'Haze_04988' => 'cav', 'Haze_06390' => 'cav', 'Haze_07592' => 'cav', 'Hma1.2p1_0013F.1_g009010' => 'hma', 'Hma1.2p1_0078F.1_g040190' => 'hma', 'Hma1.2p1_0472F.1_g159800' => 'hma', 'Hma1.2p1_0494F.1_g165570' => 'hma', 'Hma1.2p1_0558F.1_g178580' => 'hma', 'Hma1.2p1_1092F.1_g255950' => 'hma', 'HPP92_003881' => 'vpl', 'HPP92_010936' => 'vpl', 'HPP92_013741' => 'vpl', 'HPP92_013742' => 'vpl', 'HPP92_023366' => 'vpl', 'Hund02789' => 'sun', 'Hund03094' => 'sun', 'Hund07126' => 'sun', 'Hund21732' => 'sun', 'Hund23802' => 'sun', 'Lalb_Chr02g0147971' => 'lal', 'Lalb_Chr02g0147981' => 'lal', 'Lalb_Chr05g0218551' => 'lal', 'Lalb_Chr07g0182991' => 'lal', 'Lalb_Chr12g0201911' => 'lal', 'Lalb_Chr15g0078391' => 'lal', 'Lalb_Chr15g0078401' => 'lal', 'Lalb_Chr16g0383971' => 'lal', 'Lalb_Chr18g0058961' => 'lal', 'Lalb_Chr18g0058971' => 'lal', 'Lalb_Chr20g0121061' => 'lal', 'Lalb_Chr20g0121071' => 'lal', 'Lalb_Chr21g0310391' => 'lal', 'Lalb_Chr21g0310411' => 'lal', 'Lj1C1201T6' => 'lonja', 'Lj1g0016640' => 'lja', 'Lj3A826T88' => 'lonja', 'Lj4g0006123' => 'lja', 'Lj4g0009232' => 'lja', 'Lj5g0005519' => 'lja', 'Lj6g0024993' => 'lja', 'Lj6P522T31' => 'lonja', 'Lj9C205G0' => 'lonja', 'Lj9C442T3' => 'lonja', 'Lsat_1_v5_gn_1_121641' => 'lsa', 'Lsat_1_v5_gn_4_77360' => 'lsa', 'Lsat_1_v5_gn_6_115061' => 'lsa', 'Lsat_1_v5_gn_6_19480' => 'lsa', 'Lsat_1_v5_gn_7_73641' => 'lsa', 'Lsat_1_v5_gn_8_164580' => 'lsa', 'Manes.03G200800' => 'mes', 'Manes.06G110900' => 'mes', 'Manes.08G113400' => 'mes', 'Manes.08G113600' => 'mes', 'Manes.09G174600' => 'mes', 'Manes.14G060400' => 'mes', 'Manes.15G007500' => 'mes', 'Manes.16G031102' => 'mes', 'Manes.17G048600' => 'mes', 'MBI06_g06466_MAGBIO' => 'mbi', 'MBI07_g40058_MAGBIO' => 'mbi', 'MBI09_g36255_MAGBIO' => 'mbi', 'MBI10_g11212_MAGBIO' => 'mbi', 'MBI16_g32671_MAGBIO' => 'mbi', 'MBI18_g05910_MAGBIO' => 'mbi', 'MBI18_g22703_MAGBIO' => 'mbi', 'MBI19_g38158_MAGBIO' => 'mbi', 'MD02G1231100' => 'mdo', 'MD04G1196200' => 'mdo', 'MD05G1310900' => 'mdo', 'MD06G1165500' => 'mdo', 'MD07G1141000' => 'mdo', 'MD10G1290000' => 'mdo', 'MD12G1209200' => 'mdo', 'MD13G1160000' => 'mdo', 'MD13G1160100' => 'mdo', 'MD13G1160200' => 'mdo', 'MD14G1171000' => 'mdo', 'MD16G1159500' => 'mdo', 'Medtr1g083780' => 'mtr', 'Medtr2g035070' => 'mtr', 'Medtr4g088430' => 'mtr', 'Medtr4g104770' => 'mtr', 'Medtr7g109145' => 'mtr', 'Medtr7g112400' => 'mtr', 'Medtr7g112403' => 'mtr', 'MELO3C002301.2' => 'cme', 'MELO3C006802.2' => 'cme', 'MELO3C007265.2' => 'cme', 'MELO3C015275.2' => 'cme', 'MELO3C015955.2' => 'cme', 'MELO3C021292.2' => 'cme', 'MELO3C029830.2' => 'cme', 'MELO3C030869.2' => 'cme', 'Migut.B00984' => 'egut', 'Migut.D00116' => 'egut', 'Migut.G00113' => 'egut', 'Migut.M01114' => 'egut', 'Migut.O00162' => 'egut', 'MSTRG.11498' => 'ama', 'MSTRG.16402' => 'ama', 'MSTRG.17394' => 'ama', 'MSTRG.18128' => 'ama', 'MSTRG.20390' => 'ama', 'MSTRG.23169' => 'ama', 'MSTRG.27953' => 'ama', 'MSTRG.5131' => 'ama', 'MSTRG.7353' => 'ama', 'Nitab4.5_0000003g0830' => 'nta', 'Nitab4.5_0000116g0220' => 'nta', 'Nitab4.5_0000361g0100' => 'nta', 'Nitab4.5_0000570g0330' => 'nta', 'Nitab4.5_0002379g0040' => 'nta', 'Nitab4.5_0002522g0010' => 'nta', 'Nitab4.5_0002715g0080' => 'nta', 'Nitab4.5_0002813g0050' => 'nta', 'Nitab4.5_0003484g0110' => 'nta', 'Nitab4.5_0006422g0020' => 'nta', 'Nitab4.5_0008713g0010' => 'nta', 'Nitab4.5_0008913g0040' => 'nta', 'Nitab4.5_0013231g0010' => 'nta', 'Nitab4.5_0014337g0030' => 'nta', 'Nitab4.5_0016095g0010' => 'nta', 'Nn1g02712' => 'nnu', 'Nn1g04213' => 'nnu', 'Nn1g06429' => 'nnu', 'Nn3g21592' => 'nnu', 'Nn4g22584' => 'nnu', 'Nn4g25691' => 'nnu', 'Oeu006433.1' => 'oeu', 'Oeu012140.2' => 'oeu', 'Oeu017661.1' => 'oeu', 'Oeu020883.2' => 'oeu', 'Oeu036500.2' => 'oeu', 'Oeu038930.1' => 'oeu', 'Oeu054010.1' => 'oeu', 'Oeu064457.1' => 'oeu', 'Oeu064798.4' => 'oeu', 'Os01g0672400' => 'osa', 'Os01g0971100' => 'osa', 'Os02g0304900' => 'osa', 'Os05g0107900' => 'osa', 'Os05g0358000' => 'osa', 'Os05g0562200' => 'osa', 'Os12g0556100' => 'osa', 'Peaxi162Scf00001g31020' => 'pax', 'Peaxi162Scf00017g00615' => 'pax', 'Peaxi162Scf00065g00514' => 'pax', 'Peaxi162Scf00071g00430' => 'pax', 'Peaxi162Scf00073g00019' => 'pax', 'Peaxi162Scf00089g01332' => 'pax', 'Peaxi162Scf00089g01333' => 'pax', 'Peaxi162Scf00638g00419' => 'pax', 'Peaxi162Scf00763g00438' => 'pax', 'PGR031G1143' => 'pgr', 'PGR031G2811' => 'pgr', 'PGR042G2195' => 'pgr', 'PGR083G1594' => 'pgr', 'PGSC0003DMG400004625' => 'stu', 'PGSC0003DMG400018127' => 'stu', 'PGSC0003DMG400024778' => 'stu', 'PGSC0003DMG400025626' => 'stu', 'PGSC0003DMG400027072' => 'stu', 'PGSC0003DMG400031761' => 'stu', 'PGSC0003DMG400031826' => 'stu', 'Phvul.001G210800' => 'pvu', 'Phvul.002G231900' => 'pvu', 'Phvul.003G205500' => 'pvu', 'Phvul.007G199600' => 'pvu', 'Phvul.009G252700' => 'pvu', 'Potri.002G200500' => 'ptr', 'Potri.005G020900' => 'ptr', 'Potri.008G213400' => 'ptr', 'Potri.010G000800' => 'ptr', 'Potri.011G057200' => 'ptr', 'Potri.012G086500' => 'ptr', 'Potri.013G011200' => 'ptr', 'Potri.014G125500' => 'ptr', 'Potri.019G027300' => 'ptr', 'Pp3c14_18780' => 'ppa', 'Pp3c14_18810' => 'ppa', 'Pp3c1_42090' => 'ppa', 'Pp3c2_1490' => 'ppa', 'Prupe.1G126600' => 'ppe', 'Prupe.1G126700' => 'ppe', 'Prupe.4G051700' => 'ppe', 'Prupe.5G165100' => 'ppe', 'Prupe.6G316400' => 'ppe', 'Psat1g157920' => 'psa', 'Psat3g013800' => 'psa', 'Psat3g021280' => 'psa', 'Psat4g060640' => 'psa', 'Psat5g095960' => 'psa', 'Psat6g152320' => 'psa', 'Psat7g115560' => 'psa', 'PSO063G6095' => 'pso', 'PSO170G5979' => 'pso', 'PSO210G0764' => 'pso', 'PSO445G0027' => 'pso', 'PSO541G1385' => 'pso', 'PSO754G0088' => 'pso', 'PSO832G1379' => 'pso', 'QL03p017960' => 'qlo', 'QL05p041865' => 'qlo', 'QL05p041868' => 'qlo', 'QL06p011180' => 'qlo', 'QL10p006845' => 'qlo', 'QL12p028668' => 'qlo', 'RcHm_v2.0_Chr3g0456671' => 'rch', 'RcHm_v2.0_Chr4g0416281' => 'rch', 'RcHm_v2.0_Chr4g0424161' => 'rch', 'RcHm_v2.0_Chr4g0424171' => 'rch', 'RcHm_v2.0_Chr5g0009071' => 'rch', 'RcHm_v2.0_Chr7g0192501' => 'rch', 'Rhsim01G0288400' => 'rsi', 'Rhsim02G0005700' => 'rsi', 'Rhsim04G0231600' => 'rsi', 'Rhsim05G0134400' => 'rsi', 'Rhsim06G0081900' => 'rsi', 'Rhsim08G0178100' => 'rsi', 'Rhsim11G0092700' => 'rsi', 'Rhsim13G0180000' => 'rsi', 'RhsimUnG0180300' => 'rsi', 'RhsimUnG0211500' => 'rsi', 'Sabra02G0158100' => 'sbr', 'Sabra05G0026900' => 'sbr', 'Sabra10G0000600' => 'sbr', 'Sabra11G0039100' => 'sbr', 'Sabra12G0061900' => 'sbr', 'Sabra13G0009900' => 'sbr', 'Sabra14G0093300' => 'sbr', 'SalBow5G1579' => 'sbo', 'SalBow6G6471' => 'sbo', 'SalBow7G3947' => 'sbo', 'SalBow8G1729' => 'sbo', 'SalBow8G4038' => 'sbo', 'SalBow8G4174' => 'sbo', 'SalBow8G4637' => 'sbo', 'SalBow8G5528' => 'sbo', 'Sc05g0003400' => 'sci', 'Sc05g0007480' => 'sci', 'Sc09g0002780' => 'sci', 'Sc10g0010220' => 'sci', 'Sc13g0006260' => 'sci', 'Sc16g0008860' => 'sci', 'Sed0003040' => 'sed', 'Sed0003121' => 'sed', 'Sed0003795' => 'sed', 'Sed0019029' => 'sed', 'Sed0024648' => 'sed', 'Sed0025212' => 'sed', 'Sed0025341' => 'sed', 'SEGI_02819' => 'sgi', 'SEGI_02896' => 'sgi', 'SGA_v2.0_scaffold100G29710' => 'sas', 'SGA_v2.0_scaffold25G10795' => 'sas', 'SGA_v2.0_scaffold334G49034' => 'sas', 'SGA_v2.0_scaffold444G51722' => 'sas', 'SGA_v2.0_scaffold4G01965' => 'sas', 'SGA_v2.0_scaffold53G19304' => 'sas', 'SMO334G0007' => 'smo', 'SMO337G0076' => 'smo', 'SMO337G0098' => 'smo', 'SMO356G0068' => 'smo', 'Solyc01g065550.3' => 'sly', 'Solyc01g100140.4' => 'sly', 'Solyc01g100160.3' => 'sly', 'Solyc02g077750.4' => 'sly', 'Solyc03g112160.3' => 'sly', 'Solyc06g071780.4' => 'sly', 'Solyc09g075510.4' => 'sly', 'Solyc12g099390.2' => 'sly', 'Sopen01g026940' => 'spe', 'Sopen01g043650' => 'spe', 'Sopen02g022640' => 'spe', 'Sopen03g031250' => 'spe', 'Sopen06g028070' => 'spe', 'Sopen09g030310' => 'spe', 'Sopen12g034060' => 'spe', 'Sp1g01730' => 'spa', 'Sp2g19610' => 'spa', 'Sp2g21060' => 'spa', 'Sp3g04580' => 'spa', 'Sp3g05730' => 'spa', 'Sp6g02100' => 'spa', 'TAR362G0373' => 'tar', 'TAR365G0492' => 'tar', 'TAR371G0994' => 'tar', 'TAR622G0608' => 'tar', 'TAR627G0211' => 'tar', 'TAR629G0635' => 'tar', 'TAR629G1022' => 'tar', 'TAR633G1066' => 'tar', 'TAR636G2733' => 'tar', 'TAR636G3421' => 'tar', 'THA.LOC104802781' => 'tha', 'THA.LOC104809243' => 'tha', 'THA.LOC104818900' => 'tha', 'THA.LOC104821733' => 'tha', 'THA.LOC104825956' => 'tha', 'THA.LOC104827082' => 'tha', 'Thecc.01G307400' => 'tca', 'Thecc.03G026300' => 'tca', 'Thecc.04G293800' => 'tca', 'Thecc.05G319300' => 'tca', 'Thecc.06G182100' => 'tca', 'Thhalv10004901m.g' => 'esa', 'Thhalv10004911m.g' => 'esa', 'Thhalv10008730m.g' => 'esa', 'Thhalv10021475m.g' => 'esa', 'Thhalv10021933m.g' => 'esa', 'Thhalv10023620m.g' => 'esa', 'Thhalv10028950m.g' => 'esa', 'TPR.G1644' => 'tpr', 'TPR.G17699' => 'tpr', 'TPR.G19901' => 'tpr', 'TPR.G31275' => 'tpr', 'TPR.G37502' => 'tpr', 'TPR.G9642' => 'tpr', 'TWI09G0617' => 'twi', 'TWI12G0781' => 'twi', 'TWI14G0880' => 'twi', 'TWI38G0527' => 'twi', 'TWI53G0968' => 'twi', 'TWI56G1188' => 'twi', 'TWI63G0637' => 'twi', 'TWI73G1124' => 'twi', 'unitig_22.g5229' => 'ugi', 'unitig_26.g10182' => 'ugi', 'unitig_26.g9471' => 'ugi', 'unitig_749.g13564' => 'ugi', 'unitig_8.g3701' => 'ugi', 'vmacro01539' => 'vma', 'vmacro03904' => 'vma', 'vmacro08081' => 'vma', 'vmacro15128' => 'vma', 'vmacro19293' => 'vma', 'vmacro19715' => 'vma', 'vmacro20855' => 'vma', 'VMungo0251G1755' => 'vmu', 'VMungo0720G2478' => 'vmu', 'VMungo1215G0788' => 'vmu', 'VMungo1309G0196' => 'vmu', 'VMungo1309G2501' => 'vmu', 'VMungo1383G1006' => 'vmu', 'Zm00001eb139880' => 'zma', 'Zm00001eb157160' => 'zma', 'Zm00001eb240660' => 'zma', 'Zm00001eb272860' => 'zma', 'Zm00001eb285900' => 'zma', 'Zm00001eb295750' => 'zma', 'Zm00001eb360010' => 'zma', 'Zm00001eb410020' => 'zma' ) $gf_id = 'HOM05D000885' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000885' ) $data_identifier = 'HOM05D000885' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410020' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1